Author: MarkH

  • Hillary Clinton will restore the OTA

    Good news from the political front. Hillary Clinton plans to re-establish the OTA if elected.

    Fifth, we’re going to stop substituting ideology for science and evidence, and we’re going to start giving the American people again the facts on the issues that matter to them and their families. Over the past six years, this Administration has tried to turn Washington into an evidence-free zone. Whether it’s stem cell research or Plan B Contraception or pollution or global warming or the safety of our food or the quality of our air — all too often, ideology has replaced facts, and truth has been the first casualty.

    The American people deserve better than that. Way back in the 1990s, the White House had an Office of Technology Assessment that was charged with just one task: telling us the truth about science. Sorting out the competing claims and to the best of the scientists’ abilities, telling us what to believe. For decades, they cut through the myths and the spin on everything from Star Wars to AIDS prevention to solar technology. It’s time we put this office back in business, because our citizens should have the information they need about the issues that affect them.

    And from her website (since she accidentally conflated the White House office with the congressional one:

    The Congressional Office of Technology Assessment (OTA) should be restored to provide authoritative and objective analysis of complex scientific and technical issues for the federal government. From 1974 to 1995, the OTA had been a small department in the federal government providing numerous, accurate reports for policymakers. As President, Hillary would work to restore the OTA and ensure that we restore the role of evidence and facts, not partisanship and ideology, to decision making.

    This is excellent news. Even if you don’t support Hillary, to have this as a goal of a leading candidate will increase its visibility, and bring a discussion of science in policy-making into the debates in the next election.

    So cheers for Hillary for recognizing that this is an important issue and lets hope the other candidates pick up on it and support it as well.

    Also, I have put a diary up at Kos to help expand awareness of the OTA. Please visit and recommend it up if you’re a Kossack.

  • 5 Alternative Medicine Treatments that Work?

    CNN suggests there are 5 (count them 5) alternative medicine treatments that actually work! How pathetic is it for altie-meds that the article is presented this way. You know, 5 altie-med therapies that work versus, well, all real pharmaceuticals that actually have proven medical effects. As many have pointed out, if it works, it ceases to be “alternative” and then becomes evidence-based medicine. But let’s not take this for granted, let’s go over this list presented by altie-quack Andrew Weil.

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  • Mixing Religion and Politics – bad for religion too

    Check out this fascinating new study from the Barna group that appears to show the damage that is being done to the Christian faith by the political actions of right wing fundamentalists. This should serve as a serious wake-up call for the culture warriors who are attempting to increase the role of religion in politics – they are alienating the next generation of believers and non-believers severely.

    The study shows that 16- to 29-year-olds exhibit a greater degree of criticism toward Christianity than did previous generations when they were at the same stage of life. In fact, in just a decade, many of the Barna measures of the Christian image have shifted substantially downward, fueled in part by a growing sense of disengagement and disillusionment among young people. For instance, a decade ago the vast majority of Americans outside the Christian faith, including young people, felt favorably toward Christianity’s role in society. Currently, however, just 16% of non-Christians in their late teens and twenties said they have a “good impression” of Christianity.

    One of the groups hit hardest by the criticism is evangelicals. Such believers have always been viewed with skepticism in the broader culture. However, those negative views are crystallizing and intensifying among young non-Christians. The new study shows that only 3% of 16 – to 29-year-old non-Christians express favorable views of evangelicals. This means that today’s young non-Christians are eight times less likely to experience positive associations toward evangelicals than were non-Christians of the Boomer generation (25%).

    The study explored twenty specific images related to Christianity, including ten favorable and ten unfavorable perceptions. Among young non-Christians, nine out of the top 12 perceptions were negative. Common negative perceptions include that present-day Christianity is judgmental (87%), hypocritical (85%), old-fashioned (78%), and too involved in politics (75%) – representing large proportions of young outsiders who attach these negative labels to Christians. The most common favorable perceptions were that Christianity teaches the same basic ideas as other religions (82%), has good values and principles (76%), is friendly (71%), and is a faith they respect (55%).

    Even among young Christians, many of the negative images generated significant traction. Half of young churchgoers said they perceive Christianity to be judgmental, hypocritical, and too political. One-third said it was old-fashioned and out of touch with reality.

    So why is this happening? Who exactly is to blame for this view among both Christians and non-Christians that their religion is hypocritical and overly political? I think this study shows that it’s the culture warriors.

    Interestingly, the study discovered a new image that has steadily grown in prominence over the last decade. Today, the most common perception is that present-day Christianity is “anti-homosexual.” Overall, 91% of young non-Christians and 80% of young churchgoers say this phrase describes Christianity. As the research probed this perception, non-Christians and Christians explained that beyond their recognition that Christians oppose homosexuality, they believe that Christians show excessive contempt and unloving attitudes towards gays and lesbians. One of the most frequent criticisms of young Christians was that they believe the church has made homosexuality a “bigger sin” than anything else. Moreover, they claim that the church has not helped them apply the biblical teaching on homosexuality to their friendships with gays and lesbians.

    The result appears to be a continuing alienation of each subsequent generation towards Christianity.

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    And the Barna researchers believe that this isn’t just a trend seen in young people that will reverse as they get older.

    As pointed out in the Barna Update related to atheists and agnostics, this is not a passing fad wherein young people will become “more Christian” as they grow up. While Christianity remains the typical experience and most common faith in America, a fundamental recalibration is occurring within the spiritual allegiance of America’s upcoming generations.

    I think the message is clear to those that are willing to see it. Politics and religion is bad for both politics and religion. It is generally believed that one of the reasons religion has been so successful in the US while it has waned in European countries is because there has been separation of church and state in this country. When religion interferes in politics it has classically generated contempt and animosity for religion. As fundamentalists have become the most vocal and visible element in Christianity due to their politicking for bigotry towards gays and lesbians, as well as foolish abstinence laws and legislated morality, their public image has been severely compromised both within and without the Christian community.

    H/T Box Turtle Bulletin.

  • Which is a worse lie?

    I’m thinking of lies from presidents and the resulting scandal. On the one hand we have the impeachment of Clinton for “I did not have sex with that woman, Monica Lewinsky.” On the other we have “We do not torture” from George W. Bush combined with the news that we do indeed torture people.

    It is an outright lie delivered multiple times by the president to the American people. Clinton got impeached for his deception, do the Democrats have the guts to do the same for Bush’s far more serious lie which constitutes a real crime?

  • A Critical Appraisal of "Chronic Lyme" in the NEJM

    Blogging on Peer-Reviewed Research

    The New England Journal has an article on the phenomenon known as chronic Lyme disease. Lyme disease, is a tick-borne infectious disease caused by an bacterium known as Borrelia burgdorferi carried by ticks in certain regions of the United States and Europe in which it is endemic. Here is the US map of cases below.
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    It can result in a fever-like illness with a characteristic rash (although not in all cases) called erythema migrans, and if left untreated, can cause more serious problems like arthritis, and cardiovascular and neurological complications.

    A small number of people and doctors have come to believe that in addition to these known presentations, Lyme disease can also cause a chronic syndrome after treatment with antibiotics has cleared the disease. The problem is this syndrome has all the hallmarks of being a quack diagnosis. While a small subset of patient may actually have such a syndrome, for a large number of diagnoses, there are a number of red flags indicating this diagnosis is inappropriately applied and treatment worthless. Here’s an excerpt from the paper, see if you can spot them all:

    The diagnosis of chronic Lyme disease and its treatment differ substantively from the diagnosis and treatment of recognized infectious diseases. The diagnosis is often based solely on clinical judgment rather than on well-defined clinical criteria and validated laboratory studies, and it is often made regardless of whether patients have been in areas where Lyme disease is endemic.6,7 Although proponents of the chronic Lyme disease diagnosis believe that patients are persistently infected with B. burgdorferi, they do not require objective clinical or laboratory evidence of infection as a diagnostic criterion.5,8,9,10

    Several lines of reasoning are used to provide support for this diagnostic rationale. One is the unproven and very improbable assumption that chronic B. burgdorferi infection can occur in the absence of antibodies against B. burgdorferi in serum (Table 2). Negative results of serologic tests are often attributed to previous antibiotic therapy or to the theory that chronic infection with B. burgdorferi suppresses humoral immune responses; neither theory is well supported by scientific data.12,13,14 When physicians who diagnose chronic Lyme disease obtain laboratory tests to provide support for their diagnoses, they often rely heavily on “Lyme specialty laboratories.” Such laboratories may perform unvalidated in-house tests that are not regulated by the Food and Drug Administration, or they may perform standard serologic tests interpreted with the use of criteria that are not evidence-based.11,12,15,16,17

    Once the diagnosis of chronic Lyme disease is made, patients are commonly treated for months to years with multiple antimicrobial agents, some of which are inactive in vitro against B. burgdorferi.2,5,18,19,20 Antibiotics may be prescribed either simultaneously or sequentially, and they are often administered parenterally. Occasionally, these patients are treated with unconventional and highly dangerous methods such as bismuth injections or deliberate inoculation of plasmodia to cause malaria.2,21,22 No other spirochetal infection, including the neurologic complications of tertiary syphilis, is managed in an analogous fashion.2,23 The duration of treatment commonly prescribed for chronic Lyme disease often far surpasses even the conventional 6-month course of therapy successfully used for most cases of tuberculosis.

    This paper is written by eminent experts in infectious disease including Allen Steere – the discoverer of Lyme disease – they systematically evaluate the evidence for and against a chronic infection, or the advantage of current treatments for this disorder. The news gets worse.
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  • Wiley Miller on think tanks

    I’m loving the Non Sequiturs about Danae setting up her think tank.
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    I think Wiley must be reading the blog. Stop lurking and show yourself!

  • Fire Blackwater

    Have people seen the coverage of these Blackwater hearings?

    The police officer, whom CNN is identifying only as Sarhan, said the Blackwater guards “seemed nervous” as they entered the square, throwing water bottles at the Iraqi police posted there and driving in the wrong direction. He said traffic police halted civilian traffic to clear the way for the Blackwater team.

    Then, he said, the guards fired five or six shots in an apparent attempt to scare people away, but one of the rounds struck a car and killed a young man who was sitting next to his mother, a doctor.

    Sarhan said he and an undercover Iraqi police officer ran to the car but they were unable to stop it from rolling forward toward the Blackwater convoy.

    “I wanted to get his mother out, but could not because she was holding her son tight and did not want to let him go,” Sarhan said. “They immediately opened heavy fire at us.”

    “Each of their four vehicles opened heavy fire in all directions, they shot and killed everyone in cars facing them and people standing on the street,” Sarhan said.

    The shooting lasted about 20 minutes, he said.

    “When it was over we were looking around and about 15 cars had been destroyed, the bodies of the killed were strewn on the pavements and road.”

    Sarhan said no one ever fired at the Blackwater team.

    “They became the terrorists, not attacked by the terrorists,” he said.

    “I saw parts of the woman’s head flying in front of me, blow up and then her entire body was charred,” he said. “What do you expect my reaction to be? Are they protecting the country? No. If I had a weapon I would have shot at them.”

    Mohammed Abdul Razzaq was driving into Nusoor Square with his sister, her three children and his 9-year-old son Ali at the same time the Blackwater team arrived.

    “They gestured stop, so we all stopped,” Razzaq said. “It’s a secure area so we thought it will be the usual, we would stop for a bit as convoys pass. Shortly after that they opened heavy fire randomly at the cars with no exception.”

    “My son was sitting behind me,” he said. “He was shot in the head and his brains were all over the back of the car.”

    Further, the evidence is that they are violating their rules of engagement routinely:

    Records of the company and State Department show Blackwater’s use of force in Iraq has been “frequent and extensive,” the report says.

    Though Blackwater is authorized to use force only defensively, “the vast majority of Blackwater weapons discharges are pre-emptive, with Blackwater forces firing first at a vehicle or suspicious individual prior to receiving any fire,” the report states.

    And then covering it up:

    The senior Iraqi police officer said Blackwater team members were questioned by Iraqi police immediately after the incident. The contractors first said they opened fire in response to a mortar attack, the officer said. However, the contractors then changed their story at least twice during the 90 minutes they were held, the officer said.

    Iraqi police released a video of the aftermath of the shooting which shows a car that had damage consistent with a rocket-propelled grenade.

    The video shows what appears to be the spent casing of a rifle-fired grenade, and the embassy source said the Blackwater guards were armed with a rifle-fired M-203 grenade.

    The embassy source said a New York Times story reporting investigators were told that at least one guard drew a weapon on a fellow guard who did not stop shooting after colleagues called for a cease-fire was “pretty much true.”

    These mercenaries (contractors is a pathetic euphemism) have been abusing their authority and killing civilians without provocation. Blackwater is war-profiteering and making things worse for the Americans and Iraqis. How about some jail time? Not just for the killers but for the CEO Erik Prince too.

  • Sheril takes apart the latest environmental scaremongering nonsense

    I too gagged when I saw this nonsense story from the Center for American Progress listing 100 things we’ll lose with global warming. Sheril takes it apart for us, and I’m thankful.

  • A cartoon summary of the Denialist Deck of Cards

    PZ has found this wonderful cartoon that I think sums up the problem nicely.

    Danae should go to work for AEI or Cato!

  • The DI has discovered Ioannidis too!

    I realize it’s fundamental to being a crank, but the persecution complex of the IDers is getting really old. The latest is Bruce Chapman at Evolution News and Views, who no longer satisfied with grasping at the mantle of Galileo, is now groping for Semmelweis and Lister as well. The idea being, as usual, if science has been slow to accept the theories of people in the past, surely the same flaws must be preventing ID from being accepted. Never mind that these other scientists actually had things like data or evidence, or did rather fantastic things like reduce the death rates in maternity wards by 90%. Further the word “persecution” in this case largely consists of not being immediately believed. Long gone are the days in which persecution meant being crucified or thrown to the lions. Nowadays, persecution apparently means actually having to provide proof for what you say. Oh the humanity!

    It’s just the same old Galileo Gambit being recycled to include new martyrs, who if alive today would laugh just as heartily at what the DI calls science as we do.

    While nothing in this essay is new to anyone who has read Thomas Kuhn, I noticed that embedded in this little tail of hyperbole and whining was a reference to Ioannidis’ work! This, of course, elevated this tired rehash of creationist nonsense from the ignore pile to the proof-that-I-was-right pile. I always knew the cranks would one day find Ioannidis’ work and use it for the benefit of their Galileo Gambits.

    Robert Lee Hotz in the “Science Journal” column of The Wall Street Journal two weeks ago called attention to what you might call a “study of studies” that was conducted by Dr. John Ioannidis, an epidemiologist in Greece and at Tufts University (in Massachusetts). After examining 432 published research reports from science journals (peer reviewed reports, for those of you who entertain the superstition that peer review is some kind of academic prophylactic), Ioannidis wrote in the Journal of the American Medical Association that “There is an increasing concern that in modern research, false findings may be the majority or even the vast majority of published research claims.”

    Mr. Hotz writes that an earlier essay by Dr. Ioannidis in the journal PLoS Medicine, “Why Most Published Research Findings are False” is “the most downloaded paper the journal PLoS has ever published.” Here it is, in case you are interested.

    Mainstream journals have to correct errors after publication, which, of course, is just good practice and fully in the spirit of sound science. Some papers (all peer-reviewed, remember) are retracted. However, many that are shown to be flat wrong on any number of grounds simply sit out there, uncontested. Why? Might not the sloppiness have something to do with greed? The federal government is funding scientific research like never before, and, of course it is never enough. The checks on quality seem deficient, since the people who vote the funds and many who administer them are not conversant with the scientific issues.

    The DI, however, is late, as the global warming and HIV/AIDS cranks found and used his research first (for my coverage of Ioannidis see this post). The fundamental misunderstanding this crank makes is that Ioannidis doesn’t show that previous papers were fraudulent, he merely shows that many effects that appear in the literature aren’t replicated. It’s a big difference. The data were real, they were just irrelevant. It’s a problem of statistical significance. If a p < 0.05 is considered significant, a false positive effect will still appear real, and significant, about 5% of the time. Take that into account, along with the file-drawer effect and the reluctance of journals to publish negative results, and inevitably, the literature gets contaminated with a large number of false-positive results. These results should not be retracted, or disavowed, because the data are actually real. There wasn’t fabrication, nor necessarily sloppiness. False positives are bound to occur with the limitations of biomedical research, which is why you don’t consider single papers in isolation, but instead evaluate the literature as a whole.

    The redeeming feature of science is repetition. And the mere fact that Ioannidis could do this study shows that ultimately these incorrect results were not replicated, and the literature was corrected. It should also be noted that this is largely an effect in biomedical research because of problems of human studies, variability in biological effects, costs etc. It is largely irrelevant for other scientific fields which aren’t (usually) limited by things like how many cases of say, ankylosing spondylitis you can find within the time limits of a study. There’s a big difference between a gene-association study in which researchers try to link a single-nucleotide polymorphism to a multi-factorial human disease and the types of observations that are made in physics. Further, even if this research did apply, replication saves the day. The problem with evolution isn’t that it hasn’t been sufficiently studied and replicated and confirmed across multiple different species, locations and times. Evolution has been replicated and found to be consistent in every context in which it has been studied; it is the strongest kind of theory.

    So nice try DI. The mixed Galileo/Ioannidis attack is truly on the leading edge of crank attacks on science, yet like all the other cranks that have attempted the link, they once again fail to understand their source material.

    Update – John P.A. Ioannidis responds after I sent him links to cranks using his work.

    This is a very important issue that you are raising. I was not aware of this, but it is hard to understand how some people may use my work to fuel attacks against science per se. HIV/AIDS denialism, global warming denialism, and evolution denialism/intelligent design have nothing to do with science, they are dogmas that depend on beliefs, not on empirical observation and replication/refutation thereof. Perhaps we should just take it for granted that such “currents” may try to use anything to support their views. I think that one of the strongest advantages of science is that its propositions can be tested empirically and they can be replicated, but also refuted and contradicted, and improved. Obviously, this cannot be the case with any dogma, so all my research makes absolutely no sense in the setting of dogmatic belief. Science should gain respect in the wider public, especially because of its willingness to test and refute its hypotheses, in contrast to any type of dogma. In a letter to PLoSMed following my 2005 paper (2007;4:e215), I recently clarified that “Scientific investigation is the noblest pursuit. I think we can improve the respect of the public for researchers by showing how difficult success is.” Obviously this has nothing to do with dogma (religious, political, corporate, or otherwise) that really needs no hard work and by definition cannot be countered in its absurdity.

    Well, he may be shocked, but I’m not. It’s part of a paradoxical behavior of the crank. While on the one hand they struggle futilely for scientific recognition of nonsense, they simultaneously try to drag science down by any means necessary to try to lower it to the level of their own discourse. Someone who is actually interested in science and is not “anti-science” as the title of this essay suggests biologists are, wouldn’t be interested in smearing the reputation of science and the integrity of the process. A sure sign of a crank is one who rejoices in every perceived mistake or slight against science, as they mistakenly believe it makes their nonsense appear more legitimate.
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